PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3169_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 549aa    MW: 59193.2 Da    PI: 8.9302
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3169_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0581103123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  Neem_3169_f_4  81 FVCEICNKGFQRDQNLQLHRRGH 103
                    89*******************88 PP

2zf-C2H212.40.00049157179123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H + +
  Neem_3169_f_4 157 WKCEKCSKRYAVQSDWKAHSKIC 179
                    58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.8E-780103No hitNo description
PROSITE profilePS5015710.94981103IPR007087Zinc finger, C2H2
SMARTSM003550.01781103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM0035587122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-5145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.8E-7152177No hitNo description
SMARTSM00355130157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MMKACFLVEE NMSNLTSASG EVSASSGSRV ETGPMYTQQS FTSSTNEAPP PKKKRSLPGN  60
PDPDAEVIAL SPQSLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKVERKK  120
VYVCPESTCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG  180
TREYKCDCGK LFSRRDSFIT HRAFCDVLAE ESARAITANP LFPSQQPGSS ASRMLNVPAQ  240
LQSHGLQLQS LSVKREEDQL HIFNQRPDTN SIPPWLACPS AIAAGPGPPP LDLSSQLFSG  300
SSFSQYNENP SPNPNSTPLS PFQPPTSSPH TSATALLQKA AQMGVTMSKP SPLPAAMLRP  360
HQAHMTENTG STSVATSTAG SGLGLSSRED LAGGFVHSFA SFGNKAAVTS GYMEQFAVSS  420
AGAGAAAAAP SLFHDMMSSL SSATGFDGPS SSFDEALNGI LNPKAYSNFQ ETQLSKRSES  480
QLSRNDHENG AGCRGGGNVG GSDGLTRDFL GLKTFPHRDF VSLAGLDHMN PSSSTYGHQH  540
NQNPKPWQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107119KLKQRTNKVERKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012298.10.0Indeterminate(ID)-domain 7, putative
SwissprotQ8H1F51e-117IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A061GL790.0A0A061GL79_THECC; Indeterminate(ID)-domain 7, putative
STRINGVIT_04s0008g01160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-109indeterminate(ID)-domain 2